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Changelog

Source: NEWS.md

sosta 0.99.9

  • Clarification of the transformation used in the diabetic islets vignette.

sosta 0.99.8

  • Small changes in the vignettes and description.

sosta 0.99.7

  • Small updates in vignettes.
  • Updated news file for 0.99.6

sosta 0.99.6

  • Improved parallel computation by reducing memory overhead by using data frames within mclapply instead of SpatialExperiment objects.
  • Introduced new functions .SPE2df and .SPE2ppp to convert to different objects for reducing memory overhead.

sosta 0.99.5

  • New Analysis Functions: Added assignCellsToStructures, calculateBorderMetrics, calculateCellTypeFractions, calculateDistanceToBorder, calculateDistanceToTissueRegion, and calculateTissueRegionFractions to improve spatial and structural analysis.
  • Simulated data set: Introduced a new data set for testing and demonstrating package capabilities.
  • Vignette update: Expanded documentation to include multi-sample and condition-based analysis.
  • Bug fixes & optimisations: Addressed various issues and improved performance.
  • Code cleanup: Enhanced readability, maintainability, and structure. Consistent use of camelCase for function arguments.

sosta 0.99.4

  • Set number of cores to 1 to pass build on Windows.

sosta 0.99.3

Second round of review

  • Changed required R version to >= 4.4.0
  • Fixed typos
  • Updated news file to match versions

sosta 0.99.2

Addressed first review

  • Added R version and selective imports
  • Functional programming to avoid code repetition
  • Added unit tests and input checks
  • Updated the vignette with installation info

sosta 0.99.1

Initial Bioconductor submission