Package index
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SPE2ppp() - Function to convert spatial coordinates of a
SpatialExperimentobject to apppobject
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binaryImageToSF() - Converts a binary matrix to an sf polygon
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.intensityImage() - Function to estimate the intensity image of a point pattern
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.intensityThreshold() - Function to estimate the intensity threshold for the reconstruction of spatial structures
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estimateReconstructionParametersSPE() - Estimate reconstruction parameters from a set of images
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findIntensityThreshold() - Estimate the intensity threshold for the reconstruction of spatial structures
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getDimXY() - Function to get the dimension based on dim of y axis
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meanShapeMetrics() - Calculate mean shape metrics of a set of polygons
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normalizeCoordinates() - Function to normalize coordinates between zero and one while keep scaling
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reconstructShapeDensity() - Reconstruct polygon from point pattern density
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reconstructShapeDensityImage() - Reconstruct structure from spe object with given image id
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reconstructShapeDensitySPE() - Reconstruct structure from spatial experiment object per image id
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shapeIntensityImage() - Intensity plot
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shapeMetrics() - Calculate a set of shape metrics of a polygon
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st_calculateCurvature() - Title
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st_calculateShapeCurl() - Calculate curl of a polygon
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st_feature_axes() - Calculate the length of feature axes of an sf polygon
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totalShapeMetrics() - Calculate a set of shape metrics of a set of polygons
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xyCoordinates() - Function to extract x y coordinates from binary image